Skip to content

Basic viewer to check for archived and ext_info#52

Merged
will-moore merged 24 commits into
IDR:masterfrom
will-moore:archived_image_handling
Apr 27, 2026
Merged

Basic viewer to check for archived and ext_info#52
will-moore merged 24 commits into
IDR:masterfrom
will-moore:archived_image_handling

Conversation

@will-moore
Copy link
Copy Markdown
Member

@will-moore will-moore commented Jan 7, 2026

Handle "archived" images that aren't Zarr-backed (no externalInfo) by showing a "Can't view image" page instead of iviewer.

Needs config:

omero config set omero.web.viewer.view idr_gallery.views.image_viewer
Screenshot 2026-04-27 at 11 32 07

Also loads the tsv table from IDR/idr.openmicroscopy.org#218 and builds a html table from it.

Page is shown at /download_urls/.

When the page loads, we ping every "http.." link on the page - 404s are shown in red, others in green.

This identifies https://ftp.ebi.ac.uk/pub/databases/IDR/idr0170-rose-mibitof and https://ftp.ebi.ac.uk/pub/databases/IDR/idr0047-neuert-yeastmrna as being 404

Screenshot 2026-03-03 at 11 30 29

@dominikl dominikl moved this to In progress in IDR migration Mar 2, 2026
@will-moore will-moore self-assigned this Mar 2, 2026
@will-moore
Copy link
Copy Markdown
Member Author

will-moore commented Mar 24, 2026

From @francesw "can we remove the "access original data" from idr0170 landing page as this data is not on FTP, so the URL is not found anyway?
also, please remove the last line about the download options as this is also not relevant

Screenshot 2026-03-24 at 15 46 28

it should just have the BioImage Archive link, like for idr0173 below

Screenshot 2026-03-24 at 15 49 18

@will-moore will-moore marked this pull request as ready for review April 22, 2026 08:12
@will-moore
Copy link
Copy Markdown
Member Author

Created an issue for the idr0170 "bug" reported above.

@will-moore will-moore requested a review from dominikl April 27, 2026 10:40
Copy link
Copy Markdown
Member

@dominikl dominikl left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍 Looks good to me, thanks!

@will-moore will-moore merged commit 3d7a553 into IDR:master Apr 27, 2026
1 check passed
@github-project-automation github-project-automation Bot moved this from In progress to Done in IDR migration Apr 27, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants